miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|27258558|gb|BJ576730.1|BJ576730 ATAATGATCTTAATGACTTAATTAGTTGTGAAAGATCGATCAGAATTAATAATACATAATAATAATAATAATTATACATA
ATTAATACAGCACACCTAAAATTATCCGAACATACTAAGAATGTATAGCATCATGAGCAATCAGCCTTGGAATCTTAGCA
GATTGACTGCTCATGATGTTATAGCTAATATAATTTCTCTAGCTAATTCCCTAGTAGGTTAATAATTTTTAGTGTGCTGT
ACGCAACGTGGGATAATAATCAACTTAACGTAATGTAACCACATTATACGTAGTTTTAATTTTGTACTCTGATCTGATAT
GATCTTAAGTTTCATGATCGGAAACCTCCTCCCCCGAAAGCCGCCGGAGCCCAATAGTCCGCCCCGTTATCACTCCCGAC
TTGAAGCGTGCATGATATCGGCACAAGACACAACCCTCTACTCCTCAAATCCTTCTTTGCTTCTTCATCACCATCCTGCG
GCTGATGATGATCAGATGTTCCTTTCCTCTTCAAACAGTTGTCATTTAAGAGCTGACCAGGGTCTTCAGGGAATAAACTA
TTCCTCTCTGCACCTTGCACAAATGACTGTTGTTGATGCCTCATGTTATTTCCTGATCCATTGCCCAAGTAGGGCAAGCT
AAGGGCCTCAATCTGGCTTTGAAGGAATCTAATGTACCCAATAGCTTCTAACAAGACAGAAGCAGTGTCAGTCTTCCCAA
ATGGAGAA




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  179 bits (455), Expect = 1e-44
 Identities = 94/130 (72%), Positives = 103/130 (79%), Gaps = 1/130 (0%)
 Frame = -2

Query: 727 SPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGNGSGNNMRHQQQSFVQGAERNSLFP 548
           SPFGKTDTASVL EAIGYIRFLQSQIEALS PY G  +  NMRHQQ   +QG +R+ +FP
Sbjct: 281 SPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNMRHQQH--LQG-DRSCIFP 337

Query: 547 EDPGQLLNDNCLKRKGTSDHHQP-QDGDEEAKKDLRSRGLCLVPISCTLQVGSDNGADYW 371
           EDPGQL+ND C+KR+G S      Q+  EE KKDLRSRGLCLVPISCTLQVGSDNGADYW
Sbjct: 338 EDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGSDNGADYW 397

Query: 370 APAAFGGGGF 341
           AP A G  GF
Sbjct: 398 AP-ALGSAGF 406